| 1999 Men's Qualification | ||
| Place | Team | Time |
| 1 | Phi Delta Theta | 2:28.695 |
| 2 | Sigma Phi Epsilon | 2:28.816 |
| 3 | Phi Gamma Delta | 2:29.130 |
| 4 | Phi Kappa Psi | 2:29.130 |
| 5 | Dotson | 2:30.495 |
| 6 | Pi Kapa Phi | 2:30.881 |
| 7 | Sigma Nu | 2:31.027 |
| 8 | Dodds House | 2:31.432 |
| 9 | Chi Phi | 2:31.825 |
| 10 | Fratello | 2:32.006 |
| 11 | Alpha Chi Sigma | 2:32.240 |
| 12 | Delta Chi | 2:32.286 |
| 13 | Cutters | 2:32.432 |
| 14 | Lambda Chi Alpha | 2:32.3437 |
| 15 | Theta Chi | 2:32.545 |
| 16 | Collins Cycling | 2:32.773 |
| 17 | Delta Tau Delta | 2:32.809 |
| 18 | Acacia | 2:32.889 |
| 19 | Sigma Alpha Epsilon | 2:33.520 |
| 20 | Beta theta Pi | 2:34.491 |
| 21 | Sigma Chi | 2:35.017 |
| 22 | Alta | 2:36.031 |
| 23 | Delta Upsilon | 3:36.264 |
| 24 | Alpha Tau Omega | 2:37.765 |
| 25 | Hickory | 2:38.889 |
| 26 | Delta Sigma Pi | 2:39.320 |
| 27 | Kappa Sigma | 2:39.404 |
| 28 | Wright Cycling | 2:39.625 |
| 29 | Cinzano | 2:40.838 |
| 30 | Teter | 2:40.995 |
| 31 | Evans Scholars | 2:41.903 |
| 32 | Alpha Phi Omega | 2:42.576 |
| 33 | Alpha Sigma Phi | 2:44.520 |